As long as the expatriate continues to work for a covered establishment in India, he will have to continue depositing provident fund and can withdraw the same only after completing the Indian assignment.
The same can be done online. The change will benefit all foreign nationals who have contributed to the provident fund in India before the social security agreement between their home country and India came into force.
India and Japan effected SSA since Oct 2016, we have stopped remittances.
Expat continued working in India and my question is, can he apply for PF accumulation ?
Agreed with Dinesh… In your case, as you have already exited the employee from your PF list, with drawal can be done through online showing cessation or illness.